Publications

Found 42 results
Author Title Type [ Year(Desc)]
Filters: Author is Roded Sharan  [Clear All Filters]
2004
Eskin, E., Halperin E., & Sharan R. (2004).  Optimally Phasing Long Genomic Regions using Local Haplotype Predictions. Proceedings of the Second RECOMB Satellite Workshop on Computational Methods for SNPs and Haplotypes. 13-16.
Kelley, B. P., Yuan B., Lewitter F., Sharan R., Stockwell B. R., & Ideker T. E. (2004).  PathBLAST: A Tool for Alignment of Protein Interaction Networks. 32, W83-W88.
Gat-Viks, I., Shamir R., Karp R. M., & Sharan R. (2004).  Reconstructing Chain Functions in Genetic Networks. Proceedings of the Ninth Pacific Symposium on Biocomputing (PSB'04). 498-509.
Tanay, A., Sharan R., Kupiec M., & Shamir R. (2004).  Revealing Modularity and Organization in the Yeast Molecular Network by Integrated Analysis of Highly Heterogeneous Genome-Wide Data. Proceedings of the National Academy of Sciences of the United States of America. 101(9), 2981-2986.
Ben-Dor, A., Hartman T., Karp R. M., Schwikowski B., Sharan R., & Yakhini Z. (2004).  Towards Optimally Multiplexed Applications of Universal Arrays. Journal of Computational Biology. 11, 477-493.
2005
Sharan, R., Sutharan S., Kelley R. M., Kuhn T., McCuine S., Sittler T., et al. (2005).  Conserved Patterns of Protein Interaction in Multiple Species. Proceedings of National Academy of Science. 102(6), 1974-1979.
Segal, E., & Sharan R. (2005).  A Discriminative Model for Identifying Spatial Cis-Regulatory Modules. Journal of Computational Biology.
Scott, J., Ideker T. E., Karp R. M., & Sharan R. (2005).  Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks. Proceedings of the 9th Annual International Conference on Research in Computational Molecular Biology (RECOMB'05). 133-144.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2005).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Journal of Computational Biology. 12(6), 835-846.
2006
Scott, J., Ideker T. E., Karp R. M., & Sharan R. (2006).  Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks. Journal of Computational Biology. 13, 133-144.
Eskin, E., Halperin E., & Sharan R. (2006).  A Note on Optimally Phasing Long Genomic Regions Using Local Haplotype Predictions. Journal of Bioinformatics and Computational Biology. 4(3), 639-647.
2009
Bruckner, S., Hüffner F., Karp R. M., Shamir R., & Sharan R. (2009).  Torque: Topology-Free Querying of Protein Interaction Networks. Nucleic Acids Research. 37, 106-108.
Bruckner, S., Hüffner F., Karp R. M., Shamir R., & Sharan R. (2009).  Torque: Topology-Free Querying of Protein Interaction Networks. 74-89.
2010
Yosef, N.., Gramm J., Wang Q.-F.., Noble W.. S., Karp R. M., & Sharan R. (2010).  Prediction of Phenotype Information from Genotype Data. Communications in Information and Systems. 10(2), 99-114.
Bruckner, S., Hüffner F., Karp R. M., Shamir R., & Sharan R. (2010).  Topology-Free Querying of Protein Interaction Networks. Journal of Computational Biology. 17(3), 237-252.
Bruckner, S., Hüffner F., Karp R. M., Shamir R., & Sharan R. (2010).  Torque: Topology-Free Querying of Protein Interaction Networks. Journal of Computational Biology. 17(3), 237-252.
2012
Sharan, R., & Karp R. M. (2012).  Reconstructing Boolean Models of Signaling. 261-271.

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