Publications

Found 42 results
Author Title Type [ Year(Asc)]
Filters: Author is Roded Sharan  [Clear All Filters]
2012
Sharan, R., & Karp R. M. (2012).  Reconstructing Boolean Models of Signaling. 261-271.
2010
Yosef, N.., Gramm J., Wang Q.-F.., Noble W.. S., Karp R. M., & Sharan R. (2010).  Prediction of Phenotype Information from Genotype Data. Communications in Information and Systems. 10(2), 99-114.
Bruckner, S., Hüffner F., Karp R. M., Shamir R., & Sharan R. (2010).  Topology-Free Querying of Protein Interaction Networks. Journal of Computational Biology. 17(3), 237-252.
Bruckner, S., Hüffner F., Karp R. M., Shamir R., & Sharan R. (2010).  Torque: Topology-Free Querying of Protein Interaction Networks. Journal of Computational Biology. 17(3), 237-252.
2009
Bruckner, S., Hüffner F., Karp R. M., Shamir R., & Sharan R. (2009).  Torque: Topology-Free Querying of Protein Interaction Networks. Nucleic Acids Research. 37, 106-108.
Bruckner, S., Hüffner F., Karp R. M., Shamir R., & Sharan R. (2009).  Torque: Topology-Free Querying of Protein Interaction Networks. 74-89.
2006
Scott, J., Ideker T. E., Karp R. M., & Sharan R. (2006).  Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks. Journal of Computational Biology. 13, 133-144.
Eskin, E., Halperin E., & Sharan R. (2006).  A Note on Optimally Phasing Long Genomic Regions Using Local Haplotype Predictions. Journal of Bioinformatics and Computational Biology. 4(3), 639-647.
2005
Sharan, R., Sutharan S., Kelley R. M., Kuhn T., McCuine S., Sittler T., et al. (2005).  Conserved Patterns of Protein Interaction in Multiple Species. Proceedings of National Academy of Science. 102(6), 1974-1979.
Segal, E., & Sharan R. (2005).  A Discriminative Model for Identifying Spatial Cis-Regulatory Modules. Journal of Computational Biology.
Scott, J., Ideker T. E., Karp R. M., & Sharan R. (2005).  Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks. Proceedings of the 9th Annual International Conference on Research in Computational Molecular Biology (RECOMB'05). 133-144.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2005).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Journal of Computational Biology. 12(6), 835-846.
2004
Hartman, T., & Sharan R. (2004).  A 1.5-Approximation Algorithm for Sorting by Transpositions and Transversals.
Xing, E. P., Sharan R., & Jordan M. I. (2004).  Bayesian Haplotype Inference via the Dirichlet Process. Proceedings of the Second RECOMB Satellite Workshop on Computational Methods for SNP and Haplotypes. 99-112.
Xing, E. P., Sharan R., & Jordan M. I. (2004).  Bayesian Haplotype Inference via the Dirichlet Process. Proceedings of ICML 2004.
Shamir, R., Sharan R., & Tsur D.. (2004).  Cluster Graph Modification Problems.
Gramm, J., Nierhoff T., Sharan R., & Tantau T. (2004).  On the Complexity of Haplotyping via Perfect Phylogeny. Proceedings of the Second RECOMB Satellite Workshop on Computational Methods for SNPs and Haplotypes. 35-46.
Kimmel, G., Sharan R., & Shamir R. (2004).  Computational Problems in Noisy SNP and Haplotype Analysis: Block Scores, Block Identification and Population Stratification. INFORMS Journal on Computing.
Sharan, R., Ben-Hur A., Loots G. G., & Ovcharenko I. (2004).  CREME: Cis-Regulatory Module Explorer for the Human Genome. 32, W253-W256.
Segal, E., & Sharan R. (2004).  A Discriminative Model for Identifying Spatial Cis-Regulatory Modules. Proceedings of RECOMB 2004. 141-149.
Gramm, J., Ben-Dor A., & Sharan R. (2004).  Experimental Design for Multiplexed SNP Genotyping.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2004).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB'04). 282-289.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2004).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of RECOMB 2004. 282-289.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2004).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB'04). 282-289.
Pe'er, I., Pupko T., Shamir R., & Sharan R. (2004).  Incomplete Directed Perfect Phylogeny. SIAM Journal on Computing. 33(3), 590-607.

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